Glyma13g01290 - SoyBase

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Report for Sequence Feature Glyma13g01290

Feature Type:	gene_model
Chromosome:	Gm13
Start:	959517
stop:	961497
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g01290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57660	AT	Annotation by Michelle Graham. TAIR10: CONSTANS-like 5 \| chr5:23355573-23356729 FORWARD LENGTH=355	SoyBase	E_val: 4.00E-123	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1601	KOG	GATA-4/5/6 transcription factors	JGI		ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_D0EP05	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP05_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D0EP05	UniRef	Annotation by Michelle Graham. Best UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP05_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma13g01290

Locus	Gene Symbol	Protein Name
	COL4a	Constans-like 4a

Expression Patterns of Glyma13g01290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01290

Paralog	Evidence	Comments
Glyma17g07420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g093800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g01290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g01290

Limit To All Plant Sequences

>Glyma13g01290.1   sequence type=CDS   gene model=Glyma13g01290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATTGAAAGAGGAGGCTTGAAGGGATTCAGGAGCGGCTGGAGTGTGCCGCCGAAGAAGCCATGCGACTCCTGTAAGCTGGCTTCGGCGGCGCTTTTCTGCCACCTCGATTCCGCGTTTCTCTGCATCGCGTGCGATTCCAAGATTCACTGCGCGAATAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTTCTGTCACGTGCAAGGCTGACGCGGCCGCCCTTTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTCGCGCAACGCCACGAGCGCGTTCCCGTGGAGCCCTTCTTCGATTCCGCGGAATCCATCGTCAAAGCCTCCGCCACCGCCTCTTTCGGGTTCGTCGTCCCCTCCGACGATGGCGCTGCCTCCGACGTCTTCGCCCCCGACGACTCCGACTCCGCCGCCTGGCTCATCCCGAACCCCAATTTCGGGTCCAAACTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACCACAACAGCGCCGTAAACGACAGTGTCGTTCCAGTTCAAACCAAACCCTCTCTCGCCCCTCCCCCCATCAACAATCACCAGCACCACCACCAATCTGAGACTTGCTTCGACATCGATTTTTGCCGCTCGAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCTTCGTCGTCGCTTGATGTCGGAGTGGTGCCGGACGGGAACACAGTGTCGGACATGTCGTATTCGAGTGGGATTGTGGTGTCGGGTGGACAAGGCGCGACGCAGTTGTGTGGGATGGATCGGGAAGCGAGGGTGCTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTTGAGAAGACGATTCGATACGCATCGCGAAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGGCGCTCATGCTGGACACTCCATACGGTGTCGTACCAACGTTTTAG

Predicted protein sequences of Glyma13g01290

Limit To All Plant Sequences

>Glyma13g01290.1   sequence type=predicted peptide   gene model=Glyma13g01290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIERGGLKGFRSGWSVPPKKPCDSCKLASAALFCHLDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASATASFGFVVPSDDGAASDVFAPDDSDSAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNHNSAVNDSVVPVQTKPSLAPPPINNHQHHHQSETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSSGIVVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAAALMLDTPYGVVPTF*

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